Dask and nd2/tif

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1

I have a list and each element contains two image paths, one of a nd2 file and one of a tif.

The tif file contains labels relative to a microscopy image in nd2 format

I need to load, in parallel, the images and then loop over the unique labels. For each label I need the region of the image with that label and manipulate it

Does anyone have an example code for this?

Thanks

2

Hi @vicioms, welcome to Dask Discourse forum.

I have no idea of how a nd2 file is represented in Python… Is this a Numpy Array like a TIF?

Do you have tried something already? With or without Dask?

How big is your dataset? What do you want to parallelize?

It’s a bit hard to answer your question, a bit too open!